Research Areas and Topics

Computer Graphics

Current projects in the field of graphics and real-time rendering include markerless 3D motion estimation from videos, artistic style characterization for non-photorealistic rendering applications, visually realistic simulation of complex underwater environments, accurate 3D mesh reconstructions of lung/brain anatomy from HRCT/MRI image stacks, and applications of dual-quaternions in skeletal animation.

Image Analysis

The research group is currently involved in several collaborative projects with clinicians and radiologists. Key research areas are analysis of whole slide images (WSI) of breast cancer histology slides, mRNA tissue micro-array analysis using BRCA1, BRCA2 biomarkers, ultrasound image analysis algorithms for speckle reduction, feature enhancement and classifcation, digital mammogram image analysis using multifractal descriptors, and MRI image analysis and segmentation algorithms for Parkinson's disease characterization.

Classification

A very important problem in the field of digital pathology is the automated classifcation of images for computer aided diagnosis of diseases. We are currently working on several machine learning algorithms for HER2 classification in breast cancer histology slides using biomarker specific features. Other algorithms being studied are emphysema classification in HRCT images, and characterizations of microcalcifications in digital mammogram images.

Book Publication

Springer Link

3D Mesh Processing and Character Animation focusses specifically on topics that are important in three-dimensional modelling, surface design and real-time character animation. It provides an in-depth coverage of data structures and popular methods used in geometry processing, keyframe and inverse kinematics animations and shader based processing of mesh objects. It also introduces two powerful and versatile libraries, OpenMesh and Assimp, and demonstrates their usefulness through implementations of a wide range of algorithms in mesh processing and character animation respectively.

News

2023
Conference Presentations
  • Andrew Davidson, "Grey Level Texture Features for Segmentation of Chromogenic Dye RNAscope From Breast Cancer Tissue", MICAD-2023, Cambridge, U.K, 9-10 Dec 2023.
  • William Valentine, "GPU Accelerated Modelling and Real-time Rendering of Fluid Motion", IVCNZ-2023, New Zealand, 29-30 Nov 2023.
Prizes/Awards
  • Andrew Davidson, Best Paper Award for the paper "Grey Level Texture Features for Segmentation of Chromogenic Dye RNAscope From Breast Cancer Tissue" presented at MICAD-2023, Cambridge, U.K, 9-10 Dec 2023.

2022
Book
  • R. Mukundan, 3D Mesh Processing And Character Animation, Springer-Nature, Mar 2022.
Journal Papers
  • Haipeng Li, "Spatial Distribution Analysis of Novel Texture Feature Descriptors for Accurate Breast Density Classification", Sensors, Mar 2022.

2021
Ph.D Completion
  • Mar 2021: Dibash Basukala successfully completed the oral examination and qualified for the award of the Ph.D degree.
  • May 2021: Haipeng Li successfully completed the oral examination and qualified for the award of the Ph.D degree.
Journal Papers
  • Haipeng Li, "Novel Texture Feature Descriptors Based on Multi-Fractal Analysis and LBP for Classifying Breast Density in Mammograms", MDPI Journal of Imaging, Oct 2021.
  • Dibash Basukala, "Automated Segmentation of Substantia Nigra and Red Nucleus Using Quantitative Susceptibility Mapping Images: Application to Parkinson’s Disease", Computers & Electrical Engineering (Elsevier), Jan 2021.
Prizes/Awards
  • Haipeng Li, Research work featured in UC NEWS
  • Dibash Basukala, UC Foundation Doctoral Publication Prize, Feb, 2021.
  • Haipeng Li, UC Foundation Doctoral Publication Prize, Feb, 2021.

2020
Conference Presentations
  • Haipeng Li, "An Improved Micro-Calcification Detection Algorithm Using a Novel Multifractal Texture Descriptor and CNN", ICARCV-2020, Shenzhen, China, 13-15 Dec 2020.
  • Haipeng Li, "Robust Texture Features for Breast Density Classification in Mammograms", ICARCV-2020, Shenzhen, China, 13-15 Dec 2020.
  • Haipeng Li, "Robust texture features for emphysema classification in CT images", EUSIPCO-2020, Amsterdam, 18-20 Jan 2021.
Prizes/Awards
  • Haipeng Li, Finalist for the best student paper award, "Robust Texture Features for Breast Density Classification in Mammograms", International Conference on Control, Automation, Robotics and Vision (ICARCV-2020), Shenzen, China, 21-Nov-2020.

2019
Ph.D Completion
  • Aug 2019: Ori Ganoni successfully completed the oral examination and qualified for the award of the Ph.D degree.
  • Aug 2019: Prerna Singh successfully completed the oral examination and qualified for the award of the Ph.D degree.
  • Jul 2019: Huyuan Shangguan successfully completed the oral examination and qualified for the award of the Ph.D degree.
  • Jan 2019: Tieta Putri successfully completed the oral examination and qualified for the award of the Ph.D degree.
Journal Papers
  • Prerna Singh, "Feature Enhancement of Medical Ultrasound Videos Using Contrast Limited Adaptive Histogram Equalization", Journal of Digital Imaging, June 2019.
  • R. Mukundan, "Analysis of Image Feature Characteristics for Automated Scoring of HER2 in Histology Slides", Journal of Imaging, 5(3), 2019.
  • Ori Ganoni, "A Generalized Simulation Framework for Tethered Remotely Operated Vehicles in Realistic Underwater Environments", Drones, 3(1), 2019.
Conference Papers
  • Dibash Basukala, "Automated Segmentation of Substantia Nigra and Red Nucleus in Quantitative Susceptibility Mapping Images", PDCAT-2019, Gold Coast, Australia, 5-7 Dec 2019.
  • Haipeng Li, "Breast Density Classification Using Multifractal Spectrum with Histogram Analysis", IVCNZ-2019, University of Otago, Dunedin 2-4 Dec 2019.
  • Anthony Yin, "Improved Vertex Skinning Algorithm Based on Dual Quaternions", MMSP-2019, Kuala Lumpur, 27-29 Sep 2019.
  • Haipeng Li, "A Novel Application of Multifractal Features for Detection of Microcalcifications in Digital Mammograms", MIUA-2019, University of Liverpool, 24-26 July 2019.
  • Huyuan Shangguan, "3D Human Pose Dataset Augmentation Using Generative Adversarial Network", ICGSP-2019, Hong Kong, 1-3 June 2019.
  • Prerna Singh, "Feature Enhancement of Medical Ultrasound Videos Using Multifractal and Adaptive Histogram Equalization Techniques", MIPR-2019, San Jose, California, 28-30 Mar 2019.
Prizes/Awards
  • Haipeng Li, 2nd Prize, Ph.D Presentations, "Microcalcification detection and breast density classification using multifractal analysis", Computer Science and Software Engineering Postgraduate Conference, CSSE, UC, Christchurch, 06 Sep 2019.
  • Ori Ganoni, Journal paper selected as cover story for Drones Journal, Vol.3, No.1, 2019. Cover Image, Story.